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We propose a method of accelerating Python code by just-in-time compilation leveraging type hints mechanism introduced in Python 3.5. In our approach performance-critical kernels are expected to be written as if Python was a strictly typed language, however without the need to extend Python syntax. This approach can be applied to any Python application, however we focus on a special case when legacy...
Domain specific languages (DSL) have been used in a variety of fields to express complex scientific problems in a concise manner and provide automated performance optimization for a range of computational architectures. As such DSLs provide a powerful mechanism to speed up scientific Python computation that goes beyond traditional vectorization and pre-compilation approaches, while allowing domain...
Python is an interpreted language that has become more commonly used within HPC applications. Python benefits from the ability to write extension modules in C, which can further use optimized libraries that have been written in other compiled languages. For HPC users, two of the most common extensions are NumPy and mpi4py. It is possible to write a full computational kernel in a compiled language...
High-performance computing (HPC) workflows over the last several decades have proven to assist in the understanding of scientific phenomena and the production of better products, more quickly, and at reduced cost. However, HPC workflows are difficult to implement and use for a variety of reasons. In this paper, we describe the development of the Python-based cumulus, which addresses many of these...
We propose a new architecture for optimization modeling frameworks in which solvers are expressed as computation graphs in a framework like TensorFlow rather than as standalone programs built on a low-level linear algebra interface. Our new architecture makes it easy for modeling frameworks to support high performance computational platforms like GPUs and distributed clusters, as well as to generate...
Mrs [1] is a lightweight Python-based MapReduce implementation designed to make MapReduce programs easy to write and quick to run, particularly useful for research and academia. A common set of algorithms that would benefit from Mrs are iterative algorithms, like those frequently found in machine learning; however, iterative algorithms typically perform poorly in the MapReduce framework, meaning potentially...
The main goal of supervised data analytics is to model a target phenomenon given a limited amount of samples, each represented by an arbitrarily large number of variables. Especially when the number of variables is much larger than the number of available samples, variable selection is a key step as it allows to identify a possibly reduced subset of relevant variables describing the observed phenomenon...
Presents the introductory welcome message from the conference proceedings. May include the conference officers' congratulations to all involved with the conference event and publication of the proceedings record.
The Epiphany is a many-core, low power, low on-chip memory architecture and one can very cheaply gain access to a number of parallel cores which is beneficial for HPC education and prototyping. The very low power nature of these architectures also means that there is potential for their use in future HPC machines, however there is a high barrier to entry in programming them due to the associated complexities...
We present a case study of optimizing a Python-based music recognition application on Intel Haswell Xeon processor. With support from Numpy and Scipy, Python addresses the requirements of the music recognition problem with math library utilization and special structures for data access. However, a general optimized Python application cannot fully utilize the latest high performance multicore processors...
The use of Python as a high level productivity language on top of high performance libraries written in C++ requires efficient, highly functional, and easy-to-use cross-language bindings. C++ was standardized in 1998 and up until 2011 it saw only one minor revision. Since then, the pace of revisions has increased considerably, with a lot of improvements made to expressing semantic intent in interface...
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