Because of drawing of aerospace task and requirement of technical development, more autonomy and intelligence of spacecraft is needed and it is also for the cooperation of ground systems. According to requirements and the state of art of existing research, firstly a universal autonomous cooperative control process is brought forward, then an autonomous cooperative cognitive architecture is designed, detailed discussion about the correlations of each sub modules and their key implement technologies of Multi-Agent-Based Intelligent Decision-Making Model are also given. Finally, the direction of future work is concluded.