This paper describes a new data acquisition (DAQ) program for a breast dedicated high-resolution positron emission tomography (PET) camera employing 4608 position-sensitive avalanche photodiodes (PSAPDs). The DAQ program is designed to be highly scalable to match the needs of evolving implementation as the system is built up from 1 to 4608 PSAPDs. The program features real time data quality monitoring capabilities. Energy and flood histograms of each PSAPD are monitored in real time, as well as the charge histogram for each channel. This allows the user to detect any hardware problems and configuration errors prior to the completion of experiment.