The Infona portal uses cookies, i.e. strings of text saved by a browser on the user's device. The portal can access those files and use them to remember the user's data, such as their chosen settings (screen view, interface language, etc.), or their login data. By using the Infona portal the user accepts automatic saving and using this information for portal operation purposes. More information on the subject can be found in the Privacy Policy and Terms of Service. By closing this window the user confirms that they have read the information on cookie usage, and they accept the privacy policy and the way cookies are used by the portal. You can change the cookie settings in your browser.
The experimental data is soybean gene variation information file. The individual biological information is extracted from the soybean gene file and the value of the relationship between populations is computed. Then the degree of differentiation of the two populations of wild soybean and cultivated soybean is obtained. Firstly, the easy parallel serial algorithm is designed. Then according to the...
In order to improve the efficiency of soybean genetic variation information, robust relationship inference in GWAS parallel algorithm is raised in this paper. This algorithm is adopted serial and parallel hybrid structure. Each row of data is parallel processed by OpenMP technique. The I/O processing and the accumulate processing are treated as a serial. Finally, the serial and parallel algorithms...
Linkage disequilibrium method is applied for the research on inferring population genetics, LD mapping, haploid type diversity analysis and so on. Soybean genotypes are adopted as the data source and linkage disequilibrium parallel algorithm is implemented by OpenMP technology. In this algorithm, single nucleotide polymorphism sites are divided by using sliding windows into groups, adjacent sites...
The genetic variation information file of glycine max is adopted as experimental data in this paper. The genetic variation information of soybean is processed and the corresponding algorithm is paralleled by the OpenMP parallel technology. The experiment extracted the corresponding biologic information of population individuals from genetic variation information, implemented corresponding process...
Soybean genotypes are adopted as the data source and the Tajima's D statistical method is parallel implemented by OpenMP technology. This method is used for testing neutral mutation hypothesis of DNA polymorphism. By setting the sliding window size, all chromosomes containing the massive windows with multiple SNP sites are parallel processed, then the number of individual in sample, the number of...
In this paper, a GPU-based parallel algorithm is proposed to improve the processing efficiency of motif recognition algorithm. The work includes a serial motif recognition algorithm and a parallel algorithm based on GPU. Our GPU parallel algorithm is compared with the serial algorithm by using of 1 KB promoter data of five kinds of plant genes upstream regions. The experimental results show that a...
Set the date range to filter the displayed results. You can set a starting date, ending date or both. You can enter the dates manually or choose them from the calendar.