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Increasing chip sizes and better programming tools have made it possible to increase the boundaries of application acceleration with FPGAs. Two applications, localization microscopy and electron tomography, are presented in the author's PhD thesis and summarized in this paper. Both have been ported from imperative languages to the dataflow paradigm that maps well onto long processing pipelines in...
Localization microscopy enhances the resolution of fluorescence light microscopy by about an order of magnitude. Single fluorescent molecules act as switchable markers. Their detected signals can be fitted with a two-dimensional Gaussian distribution and thus located with sub-pixel resolution. In this paper we propose that these fits can be done by calculating the center of mass instead of an iterative...
In order to be able to change the functionality of filters and other data acquisition algorithms after their installation, it has been common for years to utilize reconfigurable field-programmable gate arrays (FPGAs) for data filtering and data forwarding. This paper presents a framework built to take advantage of an enhanced reconfiguration technology called dynamic partial reconfiguration (DPR)...
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