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Core collections are useful tools to characterize, explore, and exploit the genetic diversity of large germplasms. In this study, we analyzed a litchi germplasm of 96 accessions using the PowerCore program to construct two core collections: core1 containing 18 entries based only on genotype data from 30 EST-SSRs, and core2 of 22 entries based on a combined dataset of the EST-SSRs and 16 phenotypic...