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Background Intrinsically unstructured or disordered proteins function via interacting with other molecules. Annotation of these binding sites is the first step for mapping functional impact of genetic variants in coding regions of human and other genomes, considering that a significant portion of eukaryotic genomes code for intrinsically disordered regions in proteins. Results DisBind (available...
Based on MD simulations, we calculated the conformational entropies of a designed 10-residue peptide, or the mini-protein Chignolinpsilas eight residues (2-9) at four different temperature. Our results show that five conformational entropies of Chignolinpsilas eight residues have different jump. At 260 K, the conformational entropy of Gly(7) generates three orders jump, which are being founded and...
The B1 domain of protein G is a paradigm for kinetics studies. In this work, the protein structure of GB1 is modeled as an unweighted amino acid network. We find that the unweighted amino acid network is the typical property of small-world network. The nucleus residues of GB1 are identified by the analysis of the network parameter: betweenness. The results are consistent with the previous experimental...
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