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Measures of sequence similarity based on some underlying notion of relative compressibility are becoming increasingly of interest in connection with massive tasks of textfile classification such as, notably, in document classification and molecular taxonomy on a genomic scale. Sequences that are similar can be expected to share a large number of common substrings, whence some successful measures in...
The quantitative underpinning of the information contents of biosequences represents an elusive goal and yet also an obvious prerequisite to the quantitative modeling and study of biological function and evolution. Previous studies have consistently exposed a tenacious lack of compressibility on behalf of biosequences. This leaves the question open as to what distinguishes them from random strings,...
Saturated patterns with don't care like those emerged in biosequence motif discovery have proven a valuable notion also in the design of lossless and lossy compression of sequence data. In independent endeavors, the peculiarities inherent to the compression of tables have been examined, leading to compression schemata advantageously hinged on a prudent rearrangement of columns. The present paper introduces...
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