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India experienced its sixth Nipah virus (NiV) outbreak in September 2023 in the Kozhikode district of Kerala state. The NiV is primarily transmitted by spillover events from infected bats followed by human‐to‐human transmission. The clinical specimens were screened using real‐time RT‐PCR, and positive specimens were further characterized using next‐generation sequencing. We describe here an in‐depth...