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In an effort to offset the rapidly increasing data volume processed by large data centers today, their architects have increasingly been exploring unconventional architectures like FPGAs. Large-scale RC systems like Novo-G# show promise for both big-data processing and HPC, but are limited by a lengthy and difficult design process. In this paper we present a mixed MPI/OpenCL framework that enables...
Molecular dynamics (MD) is a large-scale, communication-intensive problem that has been the subject of high-performance computing research and acceleration for years. Not surprisingly, the most success in accelerating MD comes from specialized systems such as the Anton machine. Our goal is to design a reconfigurable system that can accelerate MD while also being amenable to other communication-intensive...
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