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In this paper we present SimpleElastix, an extension of SimpleITK designed to bring the Elastix medical image registration library to a wider audience. Elastix is a modular collection of robust C++ image registration algorithms that is widely used in the literature. However, its command-line interface introduces overhead during prototyping, experimental setup, and tuning of registration algorithms...
A large diversity of image registration methodologies has emerged from the research community. The scattering of methods over toolboxes impedes rigorous comparison to select the appropriate method for a given application. Toolboxes typically tailor their implementations to a mathematical registration paradigm, which makes internal functionality nonexchangeable. Subsequently, this forms a barrier for...
Knee osteoarthritis is one of the major socio-economic burdens of today. Magnetic resonance imaging facilitates analysis of disease progression by visualization of structural and biochemical changes in cartilage tissue. Segmentation of cartilages from magnetic resonance images is therefore important in clinical investigations. Today, segmentations are obtained using time-consuming manual or semi-automatic...
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