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Three dimensional electron microscopy (EM) and in particular single particle reconstruction using cryo-EM, has rapidly advanced over recent years, such that increasingly several macromolecular complexes can be resolved at sub-nanometer resolution (6-10 Aring). This paper reviews some of the main volumetric image and geometric post-processing steps once a three dimensional EM map (henceforth a 3D map)...
Adaptive mesh refinement (AMR) is a popular computational simulation technique used in various scientific and engineering fields. Although AMR data is organized in a hierarchical multi-resolution data structure, the traditional volume visualization algorithms such as ray-casting and splatting cannot handle the form without converting it to a sophisticated data structure. In this paper, we present...
Three-dimensional (3D) computer reconstruction is an ideal tool for evaluating the centralized pathology of mammalian spinal cord injury (SCI) where multiple anatomical features are embedded within each other. Here, we evaluate three different reconstruction algorithms to three-dimensionally visualize SCIs. We also show for the first time, that determination of the volume and surface area of pathological...
We introduce a scheme for static analysis that allows us to partition large geometric datasets at multiple levels of granularity to achieve both load balancing in parallel computations and minimal access to secondary memory in out-of-core computations. The idea is illustrated and fully exploited for the case of isosurface extraction, but extendible to a class of algorithms based on a small set of...
The recent growth in the size and availability of large triangular surface models has generated interest in compact multi-resolution progressive representation and data transmission. An ongoing challenge is to design an efficient data structure that encompasses both compactness of geometric representations and visual quality of progressive representations. We introduce a topological layering based...
Scalar fields arise in every scientific application. Existing scalar visualization techniques require that the user infers the global scalar structure from what is frequently an insufficient display of information. We present a visualization technique which numerically detects the structure at all scales, removing from the user the responsibility of extracting information implicit in the data, and...
Hypervolume visualization is designed to provide simple and fully explanatory images that give comprehensive in-sights into the global structure of scalar fields of any dimension. The basic idea is to have a dimension independent viewing system that scales nicely with the geometric dimension of the dataset and that can be combined with classical approaches like isocontouring and animation of slices...
The authors introduce the contour spectrum, a user interface component that improves qualitative user interaction and provides real-time exact quantification in the visualization of isocontours. The contour spectrum is a signature consisting of a variety of scalar data and contour attributes, computed over the range of scalar values /spl omega//spl isin/R. They explore the use of surface, area, volume,...
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