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We report ab initio results at the Hartree-Fock/6-31G level for the energetics of the codon-anticodon pairing in tRNA Phe . We have employed a molecular dynamics protocol in order to relax the studied crystallographic structure. Electrostatic potentials due to the presence of the hypermodified Y base and a guanine base in position 37 of the anticodon loop are compared. The results...
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