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In the last few years, it has become routine to use gene-order data to reconstruct phylogenies, both in terms of edge distances (parsimonious sequences of operations that transform one end point of the edge into the other) and in terms of genomes at internal nodes, on small, duplication-free genomes. Current gene-order methods break down, though, when the genomes contain more than a few hundred genes,...
In domestic animal species, assessment of cell-mediated immune responses to virus infection is hampered by the requirement for class I MHC compatibility between target and effector cells. Additional complicating factors can include an inability to infect target cells in vitro, or virus-induced lysis of infected target cells. One way to circumvent these problems is to use virus-mediated gene transfer...
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