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Simple Sequence Repeats or microsatellites constitute a significant portion of genomes. However the significance of SSRs in organellar genomes has not been completely understood. The availability of organelle genome sequences allow us to understand the organization of SSRs in their coding and non-coding regions. In the present study, SSRs were identified and categorized in mitochondrial and chloroplast...
In order to promote parallel computing in multi-cores, transactional memory is studied. Several transactional memory systems are introduced in this paper. to compare the performance of STM library implementations with different types of write acquisition and write versioning, RSTM and genome application is used in this paper. by analyzing the results of genome application tested on these STM library...
Since most malware is derived from prior code, understanding malware derivation and evolution is essential for many types of malware analysis. However prior models of malware relationships are insufficiently precise or fail to capture important relationships. A framework is proposed that treats both production and evolution uniformly as compositions of code transformations, and distinguishes disjoint...
Since existing high-throughput sequencing systems are originally designed for a single genome assembly, they cannot distinguish and simultaneously assemble multiple closely related sequences as well as estimate their relative abundances. This paper presents a novel approach in ViSpA software for quasispecies spectrum reconstruction. On simulated data, ViSpA accurately reconstructs up to 29 (out of...
Glycoprotein K encoded by the DEV-UL53 gene is one of the DEV envelope glycoproteins. Like most members of the alphaherpesvirinae, the genes in the UL region of its genome are well conserved, which means that the major DEV envelope glycoprotein K possessing similar functions of envelope glycoprotein K of alphaherpesvirinae plays an essential role in viral replication and cell fusion. Glycoprotein...
cDNA microarray is one of the most recent and important technology for exploring the genome. cDNA microarray image analysis aims to measure the intensity for each spot in the scanned image and this intensity represents the amount of a specific gene in the studied cell. It can affect subsequent analysis such as identification of differentially expressed genes. Microarray image analysis includes three...
Biological processes in organisms are driven by the genetic code represented by sequences of DNA. Every cell of a multi-cellular organism contains the full genome; however the gene activations differ based on a variety of factors at varying parts of the organism. The genetic code can be seen as an omni-functional code that is primarily function-agnostic, but triggers its relevant and required genes...
Transactional memory (TM) has become an active research area as it promises to simplify the development of highly scalable parallel programs. Scalability is quickly becoming an essential software requirement as successive commodity processors integrate ever larger numbers of cores. Non-trivial TM applications to test TM implementations have only recently begun to emerge, but have been written in different...
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