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In extraction of information from the biomedical literature, name disambiguation of domain-specific entities, such as proteins, is one of the most important issues. The entity ambiguity with the highest dimension is the species to which an entity is associated with. Furthermore, one of the bottlenecks in inter-species gene name normalization is species disambiguation. To enhance the performance of...
Previous studies have suggested that some graph properties of protein interaction networks might be related with gene morbidity. In particular, it has been suggested that when a polymorphism affects a gene, it is more likely to produce a disease if the node degree in the interaction network is higher than for other genes. However, these results do not take into account the possible bias introduced...
Increasing variety of molecular networks emerge from high-throughput genome data. In eukaryote, transcription factor is a major regulator at transcription level. Examining relations between features of these networks and their biological significance attracts attention of many researchers. While abundant quantity of studies represented connections between protein networks and topological parameters,...
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