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Understanding the structure and function of DNA sequences represents an important area of research in modern biology. Unfortunately, analysis of such data is often complicated by the presence of mutations introduced by evolutionary processes. At the lowest scale, these usually occur in biological sequences as character substitutions, insertions or deletions (indel). They increase the time-complexity...
Biological processes in organisms are driven by the genetic code represented by sequences of DNA. Every cell of a multi-cellular organism contains the full genome; however the gene activations differ based on a variety of factors at varying parts of the organism. The genetic code can be seen as an omni-functional code that is primarily function-agnostic, but triggers its relevant and required genes...
Compressed pattern matching on large DNA sequences data is very important in bioinformatics. In this paper, in order to improve the performance by searching pattern in parallel time, multithreaded programming technique is used. Then, two novel multithreaded algorithms are proposed, named MTd-BM and MTd-Horspool. The first one is a mutation of d-BM algorithm, which is based on Boyer-Moore method. And...
The authors present an electronic system fitted in an off-the-shelf programmable system on chip (PSoCtrade) mixed signal array device from Cypress Semiconductors devoted to readout of a capacitive biosensor. The offset voltages of the analog blocks must properly be taken into account in order to obtain a good reproducibility of the performance of different chips and different lots and for accurate...
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