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Molecular dynamics simulation is a simulation modeling of proteins and some chemical compounds in the pharmaceutical field. Molecular dynamics simulations are used as a way for drug discovery. This paper is going to propose about cloud computing model of molecular dynamics simulations using Amber and Gromacs. Cloud computing applications can be used as a bridge between molecular dynamics applications...
The structural and dynamics character of H1 peptide in aqueous solution has been investigated through temperature replica exchange molecular dynamics simulations with using two different water combined with OPLS-AA force field.
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