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RNA folding is a compute-intensive task that lies at the core of search applications in bioinformatics such as RNAfold and UNAFold. In this work, we analyze the Zuker RNA folding algorithm, which is challenging to accelerate because it is resource intensive and has a large number of variable-length dependencies. We use a technique of Lyngso to rewrite the recurrence in a form that makes polyhedral...
The analog CNN-UM can be used to solve the Navier-Stokes equations quite fast. But using in engineering applications it can not be sufficiently accurate and reliable because noises from the environment, such as power supply noise or temperature fluctuation. With the proper Field Programmable Gate Array (FPGA) we can gain sufficient (adequate) computation speed with high precision. The dedicated hardware...
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