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Prediction of subcellular localization of various proteins is an important and well-studied problem. Each compartment in cell has specific tasks, and proteins in each compartment are synthesized to fulfill these tasks, and for this reason, an effective predictive system for protein subcellular localization is crucial. Therefore, we propose a prediction based on maximal margin sphere-structure multi-class...
O-glycosylation of the mammalian protein is investigated. It is serine or threonine specific, though any consensus sequence is still unknown. We have applied support vector machines (SVM) for the prediction of O-glycosylation sites from various kinds of protein information, aiming to investigate the condition for glycosylation and elucidate the mechanisms. In the present study, first we focus on the...
Recognition of specific functionally-important DNA sequence fragments is considered one of the most important problems in bioinformatics. One type of such fragments is splice-junction (intron-exon or exon-intron) sites. Detection of splice-junction sites in DNA sequences is important for successful gene prediction. In this paper, support vector machine (SVM) is used for classification of DNA sequences...
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