An unusual tetra‐nuclear linear cyanido‐bridged complex [Ru2(μ‐ap)4‐CN‐Ru2(μ‐ap)4](BPh4) (1) (ap=2‐anilinopyridinate) has been synthesized and well characterized. The crystallographic data, magnetic measurement, IR, EPR and theoretical calculation results demonstrate that complex 1 is the first example of mixed spin Ru25+‐based complex with uncommon electronic configurations of S=1/2 for the cyanido‐C bound Ru25+ and S=3/2 for the cyanido‐N bound Ru25+. This phenomenon can be understood by the theoretical calculation results that from the precursor Ru2(μ‐ap)4(CN) (S=3/2) to complex 1 the energy gap between π* and δ* orbitals of the cyanido‐C bound Ru25+ core increases from 0.57 to 1.61 eV due to the enhancement of asymmetrical π back‐bonding effect, but that of the cyanido‐N bound Ru25+ core is essential identical (0.56 eV). Besides, the analysis of UV/Vis‐NIR spectra suggests that there exists metal to metal charge transfer (MMCT) from the cyanido‐N bound Ru25+ (S=3/2) to the cyanido‐C bound Ru25+ (S=1/2), supported by the TDDFT calculations.