The southern Barents Sea is considered to be the most productive area in the Arctic Ocean; however, there are no assessments of daily production rates in the coastal waters. During the summer and autumn of 2007, we investigated the variation of mesozooplankton community structure relative to environmental conditions at 12 coastal stations. Copepods dominated the total zooplankton biomass and abundance during both periods. Diversity indices and the total biomass of zooplankton communities differed significantly between the two seasons. Cluster analyses revealed two distinct groups of stations which were associated with Ura Bay and the adjacent open sea, respectively. Daily production rates of the copepod species examined were calculated using three methods based on: (1) a temperature-dependent equation and (2) two multiple regressions that consider temperature, body weight, and chlorophyll a concentration. Significant seasonal differences for daily production rates were found using all three model equations (p < 0.05): 358 ± 188–1,775 ± 791 versus 198 ± 85–1,584 ± 559 μg dry mass m−3 day−1. Results of principal components analyses demonstrated that the abundance and biomass of herbivorous species were related to variation in chlorophyll a concentration while the abundance and biomass of other species (omnivorous copepods and Ctenophora) were related mainly with water temperature and salinity. Mesozooplankton biomass was higher during this study relative to previous studies. Computed copepod production rates were higher compared with other Arctic seas confirming a high productive potential of the coastal southern Barents Sea.