The origin of wine has an important relevance not only in relation to the sustainability of the production systems but also in relation to wine quality, having great impact in terms of the economy of small producer. Terms such as protected geographical status (PGS), protected designation of origin (PDO), protected geographical indication (PGI) and traditional speciality guaranteed (TSG) are been used to characterise wines from different regions and countries. Despite the number of papers and reports published in the literature in relation to issues such as authenticity and discrimination in wine, few reports can be found that explore the use of molecular spectroscopy to specifically target denomination of origin. This report reviews the use of molecular spectroscopy to address such issues within the wine industry.