This research addresses the processing optimization of post-manufactured, plain weave architecture composite panels consisted of four glass layers and thermoplastic polyurethane (TPU) when formed with only localized heating. Often times, during the production of deep drawn composite parts, a fabric preform experiences various defects, including non-isothermal heating and thickness variations. Minimizing these defects is of utmost importance for mass produceability in a practical manufacturing process. The broad objective of this research was to implement a design of experiments approach to minimize through-thickness composite panel variation during manufacturing by varying the heating time, the temperature of heated components and the clamping pressure. It was concluded that the heated tooling with least area contact was most influential, followed by the length of heating time and the amount of clamping pressure.