In order to understand the behavior of the different dye-sensitized solar cell (DSC) components, an in-situ analysis should give fundamental help but it is impossible to be performed without compromising the integrity of the cell. Our recently proposed novel microfluidic approach for the fabrication of DSCs is based on a reversible sealing of the two transparent electrodes and it allows the easy assembling and disassembling of the cell, making possible an analysis of the components over time. The aim of this work is not to investigate the different degradation mechanisms of a standard DSC: we want to show that, by using a microfluidic architecture, it is possible to perform a non-destructive analysis and to monitor the photoanode and the counter electrode properties during their lifetime. Morphological (field emission scanning electron microscopy), wetting (contact angle), optical (UV-visible spectroscopy) and electrical (current–voltage and electrochemical impedance spectroscopy measurements under standard AM1.5G illumination) characterizations have been performed over a period of three weeks. The results show how the variation of the wetting and morphological properties at the counter electrode and of the dye absorbance at the photoanode are strongly related to the decrease of the cell performances as evidenced by electrical characterization, thus demonstrating the effectiveness of the use of our structure in this kind of studies.