Filtering of pulse-like FM signals with varying amplitude corrupted by impulse noise is considered. The robust DFT calculated for overlapped intervals is used for this aim. This technique is proposed in order to decrease amplitude distortion of output signals that can be introduced by the robust DFT calculated within a wide interval including possible zero-output. The proposed algorithm is realized through the following steps. In the first stage, the robust DFT is calculated for the intervals. Filtered signals from the intervals are obtained by applying the standard inverse DFT for the robust DFTs applied to input data. In the second stage, results for different overlapped intervals are combined using the appropriate order statistics. In addition, an algorithm inspired by the intersection of the confidence intervals rule is used for adaptive selection of the interval width in the robust DFT. Algorithm accuracy is tested on numerical examples. Computational complexity analysis is also provided.