Alternaria blight in Brassica spp (caused by Alternaria brassicae) is characterized by dark brown to blackish necrotic lesions surrounded by chlorotic areas on the leaves. Similar chlorotic lesions were mimicked by a chlorotic toxin (destruxin B) purified from the culture filtrate. Ultrastructural studies were performed to study and compare the changes caused by A. brassicae inoculation in vivo and its host selective toxin under in vitro conditions. Electron microscopy of healthy, chlorotic and necrotic portions of B. campestris leaves naturally infected with A. brassicae revealed considerable differences at ultrastructural level. The necrotic lesions showed plasmolysis with total disruption of cell organelles. The chlorotic lesions had normal plasma membrane but swollen mitochondria with reduced number of cristae and vesiculation of the envelope. Chloroplasts showed degeneration of granal fretwork with an increase in the number of plastoglobuli. Chlorotic lesions due to foliar application of destruxin B induced indentical canges in leaves.