Cellobiohydrolase I (CBH I) was isolated from acellulolytic fungal strain Trichoderma pseudokoningii S38, and its ultrastructure was investigated with ascanning tunneling microscope (STM). The STM images showed that the shape of intact CBH I was tadpole-like, consisting of abig head and along tail. It could be deduced that the head domain was the core protein for the catalytic function, and the long tail was the cellulose binding domain for substrate binding. Thus, for this enzyme molecule, functional differentiation is reflected in the structure peculiarities. This is the first direct observation of the three-dimensional structure of intact CBH I from real space at nanometer scale. The functional mechanism is also discussed.