Fusarium damage in wheat may reduce the quality and safety of food and feed products. In this study, the use of hyperspectral imaging was investigated to detect fusarium damaged kernels (FDK) in Canadian wheat samples. More than 5,200 kernels, representing seven major Canadian wheat classes, with varying degree of infection symptoms ranging from sound through mild to severe were imaged in the visible-NIR (400–1,000 nm) wavelength range. Partial least squares discriminant analysis (PLS-DA) was used to segregate kernels into sound and damaged categories based on kernel mean spectra. A universal PLS-DA model based on four wavelengths was able to detect FDK in all seven classes with an overall accuracy of 90 % and false positives of 9 %.