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Cupressus jiangeensis is a critically endangered conifer listed in the IUCN Red List of Threatened Species. Illumina pair-end reads of this species was used to character the whole chloroplast (cp) genome sequence. The circular genome with 128,286 bp in length contains two duplicated genes (trnL and trnQ) and 115 single copy genes, including 82 protein-coding genes, 31 tRNA and four ribosomal RNA genes...
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