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Automatic detection and classification of lesions in medical images is a desirable goal, with numerous clinical applications. In breast imaging, multiple modalities such as X-ray, ultrasound and MRI are often used in the diagnostic workflow. Training robust classifiers for each modality is challenging due to the typically small size of the available datasets. We propose to use cross-modal transfer...
Breast mass detection and segmentation are difficult tasks due to the variation in size and shape of breast masses. Constructing classifiers for this problem is also challenging due to the fact that normal tissue regions overwhelmingly outnumber abnormal regions. In this paper, we propose a novel approach for detecting and segmenting breast masses in mammography based on multi-scale morphological...
We designed a content based image retrieval (CBIR) system for dermoscopic images focusing on images with pigment networks. The system locates and matches a query image that has a pigment network with the most similar images containing pigment networks in a database of dermoscopic images. Dermoscopy interest points in the query image are detected and a vector of 128 features is extracted as the descriptor...
Radiomics, an emerging field of quantitative imaging, encompasses a broad class of analytical techniques. Recent literature have interrogated associations between quantitatively derived GLCM-based texture features and clinical/pathology information using machine learning algorithms in many cancer settings, but often fail to elucidate the predictive power of these features. Moreover, for many cancers...
The differential diagnosis of proliferative breast lesions, benign usual ductal hyperplasia (UDH) versus malignant ductal carcinoma in situ (DCIS) is challenging. This involves a pathologist examining histopathologic sections of a biopsy using a light microscope, evaluating tissue structures for their architecture or size, and assessing individual cell nuclei for their morphology. Imposing diagnostic...
Positron Emission Tomography (PET) using 18F-FDG is recognized as the modality of choice for lymphoma, due to its high sensitivity and specificity. Its wider use for the detection of lesions, quantification of their metabolic activity and evaluation of response to treatment demands the development of accurate and reproducible quantitative image interpretation tools. An accurate tumour delineation...
Accurate skin lesion segmentation is an important yet challenging problem for medical image analysis. The skin lesion segmentation is subject to variety of challenges such as the significant pattern and colour diversity found within the lesions, presence of various artifacts, etc. In this paper, we present two fully convolutional networks with several side outputs to take advantage of discriminative...
Neural networks are powerful tools for medical image classification and segmentation. However, existing network structures and training procedures assume that the output classes are mutually exclusive and equally important. Many datasets of medical images do not satisfy these conditions. For example, some skin disease datasets have images labelled as coarse-grained class (such as Benign) in addition...
Skin melanoma is one of the highly addressed health problems in many countries. Dermatologists diagnose melanoma by visual inspections of mole using clinical assessment tools such as ABCD. However, computer vision tools have been introduced to assist in quantitative analysis of skin lesions. Deep learning is one of the trending machine learning techniques that have been successfully utilized to solve...
Knowledge transfer impacts the performance of deep learning — the state of the art for image classification tasks, including automated melanoma screening. Deep learning's greed for large amounts of training data poses a challenge for medical tasks, which we can alleviate by recycling knowledge from models trained on different tasks, in a scheme called transfer learning. Although much of the best art...
Dermoscopy image is usually used in early diagnosis of malignant melanoma. The diagnosis accuracy by visual inspection is highly relied on the dermatologist's clinical experience. Due to the inaccuracy, subjectivity, and poor reproducibility of human judgement, an automatic recognition algorithm of dermoscopy image is highly desired. In this work, we present a hybrid classification framework for dermoscopy...
In this paper, we propose a multi-view deep residual neural network (mResNet) for the fully automated classification of mammograms as either malignant or normal/benign. Specifically, our mResNet approach consists of an ensemble of deep residual networks (ResNet), which have six input images, including the unregistered craniocaudal (CC) and mediolateral oblique (MLO) mammogram views as well as the...
We present the largest population-based heritability study of the human brain structural connectome, including a pathology-sensitive extension, the disconnectome. The disconnectome maps the effect of white matter lesions throughout the brain. The connectome and disconnectome were generated from diffusion-weighted images of 3255 unrelated subjects from the Rotterdam Study aged between 45 and 99 years...
Brain connectivity is increasingly being studied using connectomes. Typical structural connectome definitions do not directly take white matter pathology into account. Presumably, pathology impedes signal transmission along fibres, leading to a reduction in function. In order to directly study disconnection and localize pathology within the connectome, we present the disconnectome, which only considers...
Segmentation of skin lesions is considered as an important step in computer aided diagnosis (CAD) for melanoma diagnosis. There have many attempts to segment skin lesions in a semi- or fully-automated manner. Existing methods, however, have problems with over- or under-segmentation and do not perform well with challenging skin lesions such as when a lesion is partially connected to the background...
Prostate Cancer (PCa) is highly prevalent and is the second most common cause of cancer-related deaths in men. Multiparametric MRI (mpMRI) is robust in detecting PCa. We developed a weakly supervised computer-aided detection (CAD) system that uses biopsy points to learn to identify PCa on mpMRI. Our CAD system, which is based on a deep convolutional neural network architecture, yielded an area under...
Cortical Thickness (CTh) estimation from Magnetic Resonance Imaging (MRI) data of Multiple Sclerosis (MS) patients is biased at variable extent by the presence of white matter lesions. To overcome this limitation, several methods have been developed. In this study, we evaluate the impact on CTh measurements of different lesion corrections obtained combining three lesion segmentations (manual or automatic)...
Automatic non-invasive assessment of hepatocellular carcinoma (HCC) malignancy has the potential to substantially enhance tumor treatment strategies for HCC patients. In this work we present a novel framework to automatically characterize the malignancy of HCC lesions from DWI images. We predict HCC malignancy in two steps: As a first step we automatically segment HCC tumor lesions using cascaded...
Despite the common invisibility of cancerous lesions in transrectal ultrasound (TRUS), TRUS-guided random biopsy is considered the gold standard to diagnose prostate cancer. Pre-interventional magnetic resonance imaging (MRI) has been shown to improve the detection of malignancies but fast and accurate MRI/TRUS registration for multi-modal biopsy guidance remains challenging. In this work, we derive...
Adrenal lesions include a wide variety of benign and malignant neoplasms of the adrenal gland, and are seen in up to 5% of computed tomography (CT) examinations of the abdomen. Better identification of these lesions is important for effective management and patient prognosis. Detection on low-contrast CT images, however, even for experienced physicians can be difficult and error-prone, because the...
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