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Fluorescence imaging of transmembrane voltage-sensitive dyes is used to study electrical activation in cardiac tissue. However, fluorescence signals typically have a low signal to noise ratio that can be contaminated with motion artifacts. We describe an alternative processing approach for fluoresced transmembrane potentials (fTmps) using the wavelet multiresolution analysis. We show that fTmp signals...
We have constructed a thermal stereoscope utilizing three digital SLR cameras and an infrared camera for rapid surface reconstruction of diabetic foot geometry and temperature distribution. A structured light pattern is projected on to the foot to provide approximately 2500 reconstructed points. The reconstructed point cloud is then fitted to a finite element model, producing root mean squared errors...
Transcranial sonography has been an increasingly widespread diagnostic tool for the diagnosis of neural diseases like Parkinson's disease. However, the utilization of modern 3D ultrasound techniques has been hampered by the acoustical barrier of the skull bones. We report the development of and preliminary results from an ultrasound helmet which uses mechanical beam-steering to allow 3-D reconstruction...
Cellulose is the most abundant renewable source of organic molecules on earth[1]. As fossil fuel reserves become depleted, the use of cellulose as a feed stock for fuels and chemicals is being aggressively explored. Cellulose is a linear polymer of glucose that packs tightly into crystalline fibrils that make up a substantial proportion of plant cell walls. Extraction of the cellulose chains from...
Foot problems are varied and range from simple disorders through to complex diseases and joint deformities. Wherever possible, the use of insoles, or orthoses, is preferred over surgery. Current insole design techniques are based on static measurements of the foot, despite the fact that orthoses are prevalently used in dynamic conditions while walking or running. This paper presents the design and...
We describe an automated tracking system that allows us to reconstruct the 3D kinematics of individual mosquitoes in swarms of Anopheles gambiae. The inputs to the tracking system are video streams recorded from a stereo camera system. The tracker uses a two-pass procedure to automatically localize and track mosquitoes within the swarm. A human-in-the-loop step verifies the estimates and connects...
In this paper, we formulate the parallel magnetic resonance imaging(pMRI) as a multichannel blind deconvolution problem with subsampling. First, the model allows formal characterization of image solutions consistent with data obtained by uniform subsampling of k-space. Second, the model allows analysis of the minimum set of required calibration data. Third, the filter bank formulation provides analysis...
In this study, an electromagnetics-based inverse sensitivity mapping method is introduced for applications in high field MRI. Instead of using simplistic numerical approximations, the sensitivity of the radio-frequency coil was determined through a field approach by using iterative optimization. The current study is an extension to previous studies on the inverse method, which has restricted itself...
Magnetic resonance imaging (MRI) has long been recognized as a powerful tool for cardiovascular imaging because of its unique potential to measure blood flow, cardiac wall motion and tissue properties jointly. However, many clinical applications of cardiac MRI have been limited by low imaging speed. Three-dimensional cardiovascular MRI in real-time, or 4D cardiovascular MRI without cardiac and respiratory...
Fast MRI makes it possible to visualize dynamic biological phenomena and can potentially reduce the cost of diagnostic imaging. Constrained imaging methods such as compressive sense (CS) and optimal lattice sampling (OLS) have proven to be effective for speeding up MRI. In doing so, CS takes advantage of the image sparsity or compressibility and OLS utilizes the known signal/spectrum support. Interestingly,...
Nonlinear spatial encoding fields for magnetic resonance imaging (MRI) hold great promise to improve on the linear gradient approaches. Unlike the linear techniques, the nonlinear encoding leads to a spatially varying signal-to-noise ratio (SNR). This paper demonstrates the possibility to tailor the encoding fields to focus the high SNR areas to a region of interest. To achieve this, a metric is derived...
One of the main sources of signal degradation in rapid MR acquisitions, such as Echo Planar Imaging (EPI), is magnetic field variations caused by field inhomogeneities and susceptibility gradients. If unaccounted for during the reconstruction process, this spatially-varying field can cause severe image artifacts. In this paper, we show that correcting for the resulting degradations can be formulated...
Compressed Sensing (CS) takes advantage of the sparsity of MR images in certain bases or dictionaries to obtain accurate reconstructions from undersampled k-space data. The (pseudo) random sampling schemes used most often for CS may have good theoretical asymptotic properties; however, with limited data they may be far from optimal. In this paper, we propose a novel framework for improved adaptive...
ISAF (icosahedral symmetry-adapted functions) algorithm is the new high-resolution algorithm of icosahedral molecules. But its running speed is very slow because of the time-consuming operations of mapping sampling points into 3D space. In this paper, a fast mapping method is proposed to increase the running speed of this stage. First of all, the angle corresponding to one pixel arc in the maximum...
In this paper, we explore the application of total variation regularization method for bioluminescence tomography (BLT) with an adaptive regularization parameter choice approach. Since BLT is a seriously ill-posed problem, therefore, l2 regularized methods are frequently adopted to recover the bi-oluminescent sources. However, l2 regularized methods typically lead to smooth reconstructions. In this...
We present a system to keep track of a destructive process such as a medical specimen dissection, from data acquisition to interactive and immersive visualization, in order to build ground truth models. Acquisition is a two-step process, first involving a 3D laser scanner to get a 3D surface, and then a high resolution camera for capturing the texture. This acquisition process is repeated at each...
Registration of histology to three-dimensional (3D) magnetic resonance (MR) images is often required for the analysis of brain structure and investigation of brain pathologies. A novel algorithm for deformable registration of an individual histological section to a brain MR image is described. The cost function uses a novel hybrid intensity- and boundary surface-based measure that reflects the contrast...
Epilepsy patients with Landau-Kleffner syndrome (LKS) usually have a normal brain structure, which makes it a challenge to identify the epileptogenic zone only based on magnetic resonance imaging (MRI) data. A sparse source imaging technique called variation based sparse cortical current density (VB-SCCD) imaging was adopted here to reconstruct cortical sources of magnetoencephalography (MEG) interictal...
Compressive sensing (CS) MRI aims to accurately reconstruct images from undersampled k-space data. Most CS methods employ analytical sparsifying transforms such as total-variation and wavelets to model the unknown image and constrain the solution space during reconstruction. Recently, nonparametric dictionary-based methods for CS-MRI reconstruction have shown significant improvements over the classical...
Magnetic Resonance Imaging (MRI) is highly sensitive to motion; hence current practice is based on the prevention of motion during scan. In newborns, young children, and patients with limited cooperation, this commonly requires full sedation or general anesthesia, which is time consuming, costly, and is associated with significant risks. Despite progress in prospective motion correction in MRI, the...
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