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The relation between normal and pathological aging and the cerebrovascular component is still unclear. In this context, the common marmoset, which has the advantage of enabling longitudinal studies over a reasonable timeframe, appears as a good pre-clinical model. However, there is still a lack of quantitative information on the macrovascular structure of the marmoset brain. In this paper, we investigate...
Despite the common invisibility of cancerous lesions in transrectal ultrasound (TRUS), TRUS-guided random biopsy is considered the gold standard to diagnose prostate cancer. Pre-interventional magnetic resonance imaging (MRI) has been shown to improve the detection of malignancies but fast and accurate MRI/TRUS registration for multi-modal biopsy guidance remains challenging. In this work, we derive...
Precise and objective segmentation of atrial scarring (SAS) is a prerequisite for quantitative assessment of atrial fibrillation using non-invasive late gadolinium-enhanced (LGE) MRI. This also requires accurate delineation of the left atrium (LA) and pulmonary veins (PVs) geometry. Most previous studies have relied on manual segmentation of LA wall and PVs, which is a tedious and error-prone procedure...
The automated segmentation of the prostate gland from MR images is increasingly used for clinical diagnosis. Since deep learning demonstrates superior performance in computer vision applications, we propose a coarse-to-fine segmentation strategy using ensemble deep convolutional neural networks (DCNNs) to address prostate segmentation in MR images. First, we use registration-based coarse segmentation...
In the recent years there have been a number of studies that applied deep learning algorithms to neuroimaging data. Pipelines used in those studies mostly require multiple processing steps for feature extraction, although modern advancements in deep learning for image classification can provide a powerful framework for automatic feature generation and more straightforward analysis. In this paper,...
Estimating human age from brain MR images is useful for early detection of Alzheimer's disease. In this paper we propose a fast and accurate method based on deep learning to predict subject's age. Compared with previous methods, our algorithm achieves comparable accuracy using fewer input images. With our GPU version program, the time needed to make a prediction is 20 ms. We evaluate our methods using...
The classification of MRI images according to the anatomical field of view is a necessary task to solve when faced with the increasing quantity of medical images. In parallel, advances in deep learning makes it a suitable tool for computer vision problems. Using a common architecture (such as AlexNet) provides quite good results, but not sufficient for clinical use. Improving the model is not an easy...
Prior work has reported that brain functional networks can be utilized to differentiate healthy subjects and patients with mental disorder. Group independent component analysis (GICA) is a widely-used data-driven method for extracting brain functional networks from resting-state functional magnetic resonance imaging (fMRI) data of multiple subjects. GICA approaches estimate the group-level independent...
Placental volume measured with 3D ultrasound in the first trimester has been shown to be correlated to adverse pregnancy outcomes. This could potentially be used as a screening test to predict the “at risk” pregnancy. However, manual segmentation whilst previously shown to be accurate and repeatable is very time consuming and semi-automated methods still require operator input. To generate a screening...
Sub-concussive asymptomatic head impacts during contact sports may develop potential neurological changes and may have accumulative effect through repetitive occurrences in contact sports like American football. The effects of sub-concussive head impacts on the functional connectivity of the brain are still unclear with no conclusive results yet presented. Although various studies have been performed...
MRI parameter quantification has diverse applications, but likelihood-based methods typically require nonconvex optimization due to nonlinear signal models. To avoid expensive grid searches used in prior works, we propose to learn a nonlinear estimator from simulated training examples and (approximate) kernel ridge regression. As proof of concept, we apply kernel-based estimation to quantify six parameters...
We introduce a new fully automated breast mass segmentation method from dynamic contrast-enhanced magnetic resonance imaging (DCE-MRI). The method is based on globally optimal inference in a continuous space (GOCS) using a shape prior computed from a semantic segmentation produced by a deep learning (DL) model. We propose this approach because the limited amount of annotated training samples does...
Quantitative medical imaging often utilizes intensity normalization based on a signal from a neighboring region. The choice of this region can substantially affect the quantification, and is potentially confounded by the presence of pathology or other limitations such as partial volume effect. In this paper we outline the desirable list of criteria for selecting a normalization region of interest,...
Detection of infarcted myocardium in the left ventricle is achieved with delayed enhancement magnetic resonance imaging (DE-MRI). However, manual segmentation is tedious and prone to variability. We studied three texture analysis methods (run-length matrix, co-occurrence matrix, and autoregressive model) in combination with histogram features to characterize the infarcted myocardium. We evaluated...
A variety of parametric models based on the Apparent Diffusion Coefficient (ADC) have been proposed to describe signal decay in the interpretation of diffusion weighted Magnetic Resonance Imaging data. In this work, we investigate the robustness of several of these models, including the exponential model, bi-exponential model and the recently proposed gamma distribution model, using a Crámer-Rao lower...
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