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Advances in high-resolution 3D microscopy have enabled the investigation of subcellular microstructures in biological specimen. For a full understanding of the organism's structure and function, it is mandatory to obtain data from the whole animal, not just parts of it. In this paper, we present our work with the Knife-Edge Scanning Microscope (KESM) for imaging a Nissl-stained whole zebrafish larva...
Cardiac electrical activities are varying in both space and time. Human heart consists of a fractal network of muscle cells, Purkinje fibers, arteries and veins. Whole-heart modeling of electrical wave conduction and propagation involves a greater level of complexity. Our previous work developed a computer model of the anatomically realistic heart and simulated the electrical conduction with the use...
We present finite element (FE) modeling approaches of ear mechanics including 3-dimensional (3D) reconstruction of the human middle and inner ear. Specifically, we demonstrate a semi-automatic methodology for the 3D reconstruction of the inner ear structures, a FE harmonic response model of the middle ear to predict the stapes footplate frequency response, a 2D FE slice model of the cochlea for the...
Laparoscopic Surgery (LS) is a modern surgical technique whereby the surgery is performed through an incision with tools and camera as opposed to conventional open surgery. This promises minimal recovery times and less hemorrhaging. Multi view LS is the latest development in the field, where the system uses multiple cameras to give the surgeon more information about the surgical site, potentially...
In this paper, a retinal image registration method is proposed. The approach utilizes keypoint correspondences and assumes that the human eye has a spherical or ellipsoidal shape. The image registration problem amounts to solving a camera 3D pose estimation problem and, simultaneously, an eye 3D shape estimation problem. The camera pose estimation problem is solved by estimating the relative pose...
Filtering and segmentation of vasculature is an important issue in medical imaging. The visualization of vasculature is crucial for the early diagnosis and therapy in numerous medical applications. This paper investigates the use of Gabor wavelet to enhance the effect of vasculature while eliminating the noise due to size, sensitivity and aperture of the detector in 3D Optical Resolution Photoacoustic...
Femur fracture is one of the common diseases in the elderly. In this paper, an automatic and efficient classification method of femoral pertrochanteric fractures is proposed based on image segmentation techniques. The types of femoral pertrochanteric fracture are defined firstly according to the difference of fracture parts. To reduce the computational complexity, only four directions images are used...
There are a variety of medical imaging modalities available, although each modality focus into different aspects, for example: anatomical, physiological or geometrical information. This paper presents a new imaging modality (3D THERMO-SCAN) that combines anatomical computer tomography (CT) imaging slices, together with 2D infrared thermography images and 3D scanned shaped models of the area under...
Macular degeneration is the third leading cause of blindness worldwide and the leading cause of blindness in the developing world. The analysis of gait parameters can be used to assess the influence of macular degeneration on gait. This study examines the effect of macular degeneration on gait using inertial sensor based 3D spatio-temporal gait parameters. We acquired gait data from 21 young and healthy...
Limited field of view (FOV) is a major problem for 3D real-time echocardiography (3DRTE), which results in an incomplete representation of cardiac anatomy. Various image registration techniques have been proposed to improve the field of view in 3DRTE by fusing multiple image volumes. However, these techniques require significant overlap between the individual volumes and rely on high image resolution...
Three-dimensional ultrasound is an emerging modality for the assessment of complex cardiac anatomy and function. The advantages of this modality include lack of ionizing radiation, portability, low cost, and high temporal resolution. Major limitations include limited field-of-view, reliance on frequently limited acoustic windows, and poor signal to noise ratio. This study proposes a novel approach...
The Mitral Valve is a structure on the left side of the human heart that regulates the flow of oxygenated blood into the Left Ventricle and also helps maintain the pressure within the Left Ventricle when the blood gets pumped to the rest of the body from the Left Ventricle. Pathology of the Mitral Valve often manifests through structural changes in the anatomy. Assessment of Mitral Valve pathology...
In this paper, we introduce a vision-based localization algorithm that can accurately track responders during rescue operations in urban areas that are Global Navigation Satellite System (GNSS)-denied. The proposed algorithm works successfully with the rich visual features of an urban environment and obtains an average localization accuracy of 2.5 ft. In addition, we also provide a 3D representation...
The main purpose of this work is to present a simple quantitative approach for assessing artifacts in passive instruments when used in an MRI environment. It is mainly based on a quantitative indicator related with the amount of distortion produced by the instrument on a 3D surface obtained from the 2D MR image. After a preprocessing stage for attenuation of the 3D surface low frequency components,...
Doppler ultrasound is a non-invasive diagnostic tool for the quantitative measurement of blood flow. However, given that it provides velocity data that is dependent on the location and angle of measurement, repeat measurements to detect problems over time may require an expert to return to the same location. We therefore developed an image-guidance system based on ultrasound B-mode images that enables...
The three dimensional (3D) innervation zone (IZ) imaging approach (3DIZI) has been developed in our group to localize the IZ of a particular motor unit (MU) from its motor unit action potentials decomposed from high-density surface electromyography (EMG) recordings. In this study, the developed 3DIZI approach was combined with electrical stimulation to investigate global distributions of IZs in muscles...
Automated prostate diagnoses and treatments have gained much attention due to the high mortality rate of prostate cancer. In particular, unsupervised (automatic) prostate segmentation is an active and challenging research. Most conventional works usually utilize handcrafted (low-level) features for prostate segmentation; however they often fail to extract the intrinsic structure of the prostate, especially...
The cardiac conduction system (CCS) is responsible for the initiation and propagation of action potentials through the heart ensuring efficient pumping of blood. Understanding the anatomy of the CCS and its relationship with other major cardiac components is important to help understand arrhythmias and how certain procedures may increase the incidence of arrhythmias developing. We sectioned a whole...
Correct localization of the needle is of vital importance to guarantee successful puncture. The complexity of real US data increases the difficulties. A multi-scale random sample consensus (MS-RANSAC) algorithm is proposed in this paper to locate the needle in complicated 3D US data. The algorithm uses the radius difference between needle and other tubular human tissues to extract the correct needle...
In this paper, we used smartphone to obtained pulsatile signal from a fingertip by illuminating the skin tissue using flashlight and with an on-board camera to record the change of the light intensity reflected from the tissue. The pulsatile signal is produced by analyzing average green component values of the frames taken by the camera and the heart rate is estimated in real time by detecting the...
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