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Photonic crystal surfaces are demonstrated as a means for enhancing the detection sensitivity and resolution for assays that use a fluorescent tag to quantify the concentration of an analyte protein molecule in a liquid test sample. Computer modeling of the spatial distribution of resonantly coupled electromagnetic fields on the photonic crystal surface are used to estimate the magnitude of enhancement...
Endoscopic treatment of bladder cancer is more and more often based on photodynamic diagnostics (PDD), a specialized endoscopic technique where a narrow-band bluish illumination causes tumors to fluoresce reddish. Contrast between tumors and healthy bladder tissue is thus noticeably increased compared to white light endoscopy. A downside of PDD is the low illumination power, which requires that the...
Multiphoton calcium fluorescence imaging has gained prominence as a valuable tool for the study of brain cells, but the corresponding analytical regimes remain rather naive. In this paper, we develop a statistical framework that facilitates principled quantitative analysis of multiphoton images. The proposed methods discriminate the stimulus-evoked response of a neuron from the background firing and...
Full angle noncontact fluorescence molecular tomography allows acquiring large data sets from complete angles, and simplifies the experimental setups. Accurately extracting animal surface is important for this kind of imaging systems. However, in in-vivo experiments, mouse breath movements and mechanical errors will influence the surface reconstruction. An optimal Radon transform based surface reconstruction...
Fluorescently tagged proteins such as GFP-PCNA produce rich dynamically varying textural patterns of foci distributed in the nucleus. This enables the behavioral study of sub-cellular structures during different phases of the cell cycle. The varying punctuate patterns of fluorescence, drastic changes in SNR, shape and position during mitosis and abundance of touching cells, however, require more sophisticated...
The fluorescence molecular tomography (FMT) image quality could be improved significantly with reconstructed optical properties using diffuse optical tomography (DOT). However, different DOT algorithms and different constraint parameters usually lead to DOT images of obvious different image quality. In this paper, simulation experiment results demonstrate that the FMT image quality is robust to the...
Clinical translation of scientific discoveries is often the long-term goal of academic medical research. However, this goal is not always realized due to the complicated path between bench research and clinical use. In this review, we outline the fundamental steps required for first-in-human testing of a new imaging device, and use the FLAREtrade (Fluorescence-Assisted Resection and Exploration) near-infrared...
Spatial analysis of gene localization using fluorescent in-situ hybridization (FISH) labeling is potentially a new method for early cancer detection. Current methodology relies heavily upon accurate segmentation of cell nuclei and FISH signals in tissue sections. While automatic FISH signal detection is a relatively simpler task, accurate nuclei segmentation is still a manual process which is fairly...
Protein subcellular location is one of the most important determinants of protein function during cellular processes. Changes in protein behavior during the cell cycle are expected to be involved in cellular reprogramming during disease and development, and there is therefore a critical need to understand cell-cycle dependent variation in protein localization which may be related to aberrant pathway...
This paper presents a system for the automatic processing of digital images obtained from gel electrophoresis. The system identifies automatically the number and the location of lanes in the digital image, as well as the location of bands on each lane, without any intervention from the user. A reference lane with a know substance is used to compute the molecular weight of the observed (unknown) bands...
The application of CCD camera improves the quality of fluorescence molecular tomography (FMT). However, large size of data set offered by CCD might increase the computational burden in the reconstruction. To balance the data size and reconstruction quality, singular value decomposition (SVD)-based analysis is applied. Simulation is performed with mouse atlas. By observing the relative gain of number...
Recently, new non-invasive imaging methods have been developed and applied to cellular and animal mammary models that have enabled breast cancer researchers to track key players and events in mammary metastasis. Noninvasive nonlinear optical methods such as multiphoton laser scanning microscopy (MPLSM), Fluorescence Lifetime Microscopy (FLIM) and second harmonic generation (SHG) imaging provide an...
Intramyocardial reentry is implicated as a primary cause of the most deadly cardiac arrhythmias known as polymorphic ventricular tachycardia and ventricular fibrillation. However, the mechanisms involved in the triggering of such reentry and controlling its subsequent dynamics remain poorly understood. One of the major obstacles has been a lack of adequate tools that would enable 3D imaging of electrical...
The nematode Caenorhabditis elegans (C. elegans) is a widely used model organism in biological investigations. Due to its well-known and invariant cell lineage tree, it can be used to study the effects of mutations and various disease processes. Effective and efficient analysis of the wealth of time-lapse fluorescence microscopy image data acquired in such studies requires automation of the cell segmentation...
We have developed a multimodal CMOS sensing device to detect fluorescence image and electrical potential for neural activities in a mouse deep brain. The device consists of CMOS image sensor with on-chip electrodes and excitation light sources, all of which are integrated on a polyimide substrate. The novel feature of this device is its embedded on-chip electrodes which are partially transmit incident...
The feasibility of multilayer thin film coated dissolved-core alginate-templated microsphere sensors based on fluorescence resonance energy transfer and competitive binding, was explored in simulated interstitial fluid, using glucose as a model analyte. The glucose sensitivity was observed to be 0.89%/mM glucose with a linear response in the range of 0-50 mM glucose. The sensor response was observed...
We describe an optical imaging methodology applicable to the detection of a fluorescent agent below the surface of turbid media with lifetime property extraction. The method exploits the collimation detection capabilities of an angular filter array to form a projection image of a fluorophore embedded within the tissue-mimicking phantom. A femto-second pulsed laser was used to illuminate the tissue...
In our novel technique of tumor vessels treatment, High Z (HZ) contrast atoms are injected into the blood vessel and the tumor region is irradiated with ldquonarrowbandrdquo fluorescence photon (FP) beam tuned to the ldquoresonance energiesrdquo. Theoretically, this technique guarantees a dose 102 - 103 higher than that achieved in conventional radiation therapy (RT). Meanwhile, this high dose is...
An original algorithm for measuring diffusion coefficients of optical molecular probes in matrigel from fluorescence data is introduced. The algorithm was developed in Fortran and linked to graphic user interface in LabVIEW software that also performs image acquisition and processing. The software models pharmacokinetics of optical molecular probes providing the best fit of experimental data. The...
Continuous monitoring of specific metabolite and drug levels within a patient's blood can contribute to shorter hospital stays and more successful treatment of both chronic and acute diseases. Intravenous microdialysis is an attractive technology for continuous venous blood sampling that can be used to manage tight glucose control and to sample a large variety of molecules from human blood. In combination...
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