The present paper has considered scientific and methodological aspects of development of methodological, informational and instrumental support for the educational risk control system in higher educational institutions. Mathematical model, method and algorithm for estimation of educational program implementation efficiency in educational institutions have been developed. Usage of geoinformation technologies increases efficiency of control due to automation of collection, processing and analysis of data on the educational program implementation. The suggested model for estimation of the educational risk in higher institutions will allow comprehensively estimating processes occurring in departments since it takes into consideration pedagogical, economic and social aspects. Analysis of components and functions of the educational risk has been carried out. Software implementation of suggested approaches has been performed in the database control system PostgreSQL. Results of testing of the suggested technology on the basis of open data of Ryazan state radio engineering university for 2016 have been represented.