Learning about the structure of hidden or covert networks is a major challenge in epidemiology, sociology, and intelligence analysis. Vertices in hidden networks usually cannot be enumerated or sampled in a systematic way; they can only be revealed by tracing links emanating from already-observed vertices. Observers sometimes cannot follow links directly, and instead must rely on passive observation of a dynamic process to reveal vertices and edges. This paper outlines a framework for estimating network structures from partial observation of information diffusion through the network. Diffusion is modeled by a continuous-time Markov epidemic model. Edges are revealed by transmission events and new vertices are uncovered when information is transmitted to them. The approach is a generalization of tools developed to reconstruct drug-user networks from respondent-driven sampling studies in epidemiology. The likelihood of the diffusion process can be interpreted as an exponential random graph model. A Bayesian method for probabilistic reconstruction of the transmission-induced subgraph is described.