This paper has made a thorough analysis of brushless DC motor simulation system, in which we use a single neuron PID control algorithm based on RBF neural network for on-line identification (RBF-PID Algorithm). A special human-computer interaction (HCI) interface was designed in this paper, which provides interface for users to set the correlative parameters and select related control algorithm. Two control algorithms: Conventional PID and RBF-PID algorithm were respectively adopted in this paper to make a comparison. The result shows that RBF-PID Algorithm performs better controlling Brushless DC Motor. Thus, the Simulation System is of great advantage for parameters testing and setting for the controller of Brushless DC Motor compared with traditional manual methods in practical use.