The article proposed the pollution control strategies of corn deep processing industry, which combined the characteristics and the pollution statuses of the union industry, to promote economy and protect environment. Then two aspects were discussed: cleaning production technics and recycle economic developed pattern of corn deep processing industry in Jilin Province. The results indicated that through the cleaning production technics and constructing ecology industrial chain of corn deep processing, it could realize to save the resources and energy availably and utilize the byproducts and residues effectively and could get better environmental, economic and social efficiency, therefore, it could promote sustainable and healthy development of corn deep processing industry.