Logistics and the development of social economy complement each other. Logistics plays a positive role in economy development, but it also causes serious pollution and destruction to the environment at the same time. In this article, logistics factors and deep reasons of effecting environment were analyzed by wuyuan theory. The development of the logistics should be coordinated with environment, the coordination theory is first time putted forward in this article, one commensal logistics the environmental protection system is established by Extension. In protection of logistics environment, government should play a leading role in the construction of the logistics, and enterprises should set up reverse logistics voluntarily. At the same time, green coordinated supply chain was set up with game theory, which will optimize the relationship between supply and demand and promote environment protection.