In this study, a fuzzy-boundary interval-stochastic programming (FBISP) method is developed for planning water resources management systems under uncertainty. The developed FBISP method can deal with uncertainties expressed as probability distributions and fuzzy-boundary intervals. With the aid of an interactive algorithm woven with a vertex analysis, solutions for FBISP model under associated α-cut levels can be generated by solving a set of deterministic submodels. The related probability and possibility information can also be reflected in the solutions for the objective function value and decision variables. The developed FBISP is also applied to water resources management and planning within a multi-reservoir system. Various policy scenarios that are associated with different levels of economic consequences when the pre-regulated water-allocation targets are violated are analyzed. The results obtained are useful for generating a range of decision alternatives under various system conditions, and thus helping decision makers to identify desired water resources management policies under uncertainty.