Stem cell therapies appear promising for treating certain neurodegenerative disorders and molecular imaging methods that track these cells in vivo could answer some key questions regarding their survival and migration. Bioluminescence imaging (BLI), which relies on luciferase expression in these cells, has been used for this purpose due to its high sensitivity.In this study, we employ BLI to track luciferase-expressing human neural progenitor cells (hNPC Luc2 ) in the rat striatum long-term.We show that hNPC Luc2 are detectable in the rat striatum. Furthermore, we demonstrate that using this tracking method, surviving grafts can be detected in vivo for up to 12 weeks, while those that were rejected do not produce bioluminescence signal. We also demonstrate the ability to discern hNPC Luc2 contralateral migration.Some of the advantages of BLI compared to other imaging methods used to track progenitor/stem cells include its sensitivity and specificity, low background signal and ability to distinguish surviving grafts from rejected ones over the long term while the blood–brain barrier remains intact.These new findings may be useful in future preclinical applications developing cell-based treatments for neurodegenerative disorders.