Natural zooplankton is a potential food resource for juvenile fish in fish farms as it is a good source of fats, carbohydrates, and protein. However, it is also a potential source of parasites and pathogens. The present study was conducted (1) to estimate the risk of parasite transfer by live copepod food under intensive farming conditions using the parasites Triaenophorus crassus and Triaenophorus nodulosus as example and (2) to look for strategies to avoid parasite infestation of juvenile fish.An easy and routinely applicable aniline blue staining method was developed to check the infestation levels of copepods with procercoids during the on-growing season of juvenile fish. From the copepod species occurring in zooplankton Cyclops spp. was infested frequently (9.4±12.0%, maximum 38.7%), Diaptomus spp. infrequently (1.5±1.6%, maximum 3.2%), Daphnia spp. never. Juvenile grayling, Thymallus thymallus, and corgonids, Coregonus sp., which had been fed with natural zooplankton revealed infestations rates with T. crassus of circa 5%, with T. nodulosus of circa 10%. As the occurrence of procercoids in the zooplankton was temporary limited, Triaenophorus infestation can be avoided by using artificial food instead of live copepods during the risky season.To prevent parasite infestation of juvenile fish methods were investigated to eradicate procercoids from copepods by chemical treatment (sodium chloride, hydrogen peroxide, citric acid treatment) and by freeze-thawing methods. Chemical methods failed to remove procercoids. In fish, which had been fed with frozen thawed zooplankton, no Triaenophorus spp. infestation was observed. Their survival rates were similar as in the control fed with live zooplankton, however the weight of the fish was significantly lower.