The short-term responses of soil microbial processes and community structure to perturbation constitute one aspect of soil quality. Such responses are often associated with an increase in the emissions of greenhouse gases (i.e., CO 2 , NO, or N 2 O) and the accumulation and potential loss of nitrate by leaching. Here we describe our recent work on responses of soil carbon and nitrogen dynamics, microbial biomass, and microbial community structure to a tillage event in intensively managed vegetable crop systems in California. Our results indicate that CO 2 emission is high for the first day after tillage, but respiration declines or remains constant, suggesting that physical processes are responsible for the high flux from the soil surface. Net mineralization and nitrate accumulation increase for several days after tillage, and this can be accompanied by higher denitrification rates. Tillage causes immediate changes in microbial community structure, based on phospholipid fatty acid (PLFA) analysis, but little concomitant change in total microbial biomass. Tillage events contribute to decreased soil quality by increasing emissions of greenhouse gases, and increasing the potential for nitrate leaching to groundwater, and these negative aspects must be weighed against the benefits of tillage for increasing the health and productivity of some crops.