Coordinating behavior of novel N 2 O type mixed ligand complexes (1–6) have been synthesized from substituted fluoropyrimidine [5-Fluorouracil (5-FU; A)] with biopotent imidazole enzyme constituents (B) viz., imidazole(him) and benzimidazole(bim) in the presence of Ni(II), Cu(II) and Zn(II) ions. Synthesized complexes were characterized by chemical analysis, spectral studies, magnetic moment and conductivity measurements. The results of chemical analysis and the observed low molar conductance values propose their stoichiometry to be 1:1:1 (M:A:B) with non-electrolytic nature. From the spectral data, it is inferred that the ligands A & B coordinate with M(II) ions in bi and monodentate approach through C (4) O, N (3) and imidazole ring N (3) atoms respectively. The thermogravimetric analysis shows the dehydration, decomposition and thermal stability of mixed ligand complexes. XRD and SEM patterns show sharp crystalline peaks with homogeneous morphology. In vitro antimicrobial activities of free ligands (A & B) and their metal complexes were screened against some pathogenic strains by well diffusion technique. Absorption and gel electrophoresis experiments on the interaction of mixed ligand complexes with DNA suggest that all the complexes can bind as well as cleave the DNA by intercalation between chromophores and DNA base pairs. In addition, in vitro antioxidant activities were tested by DPPH free radical scavenging model.