We previously showed (Fulceri et al., Biochem. J. 325, 423, 1997) that the fatty acyl CoA ester palmitoyl CoA (PCoA) complexed with a molar excess of its cytosolic binding protein (ACBP) causes a discrete Ca 2+ efflux or allows Ca 2+ release by suboptimal caffeine concentrations, in the Ca 2+ -preloaded terminal cisternae fraction (TC) from rabbit skeletal muscle, by activating ryanodine receptor Ca 2+ release channels (RyRC). We show here that both effects were abolished by pretreating TC with the FKBP12 ligand rapamycin (20 μM). Moreover, rapamycin reversed the Ca 2+ release induced by combined treatment with 3 mM caffeine and the PCoA–ACBP complex. Rapamycin also reduced the Ca 2+ -releasing activity by PCoA alone. Under the above experimental conditions, rapamycin removed FKBP12 from the TC membranes, as revealed by Western blot analysis. We conclude that FKBP12 associated with RyRC in the TC membrane participates in the activation of the Ca 2+ channel by fatty acyl CoA esters.