Plant pathogenic bacteria and fungi negatively affect a large number of important fruit and vegetables during the growing season and throughout postharvest storage. Therefore, the current study focuses on the preparation of N-(benzyl)chitosan derivatives as antimicrobial agents to control these microorganisms. Chitosan was reacted with a set of aromatic aldehydes by reductive amination involving formation of the corresponding imines, followed by reduction with sodium borohydride to produce the N-(benzyl)chitosan derivatives. The end products were analyzed using 1 H NMR spectroscopy and the degrees of substitution ranged from 0.12 to 0.29. The antibacterial activity was evaluated in vitro against the crown gall disease Agrobacterium tumefaciens (Family: Rhizobiaceae; Class: Alpha Proteobacteria) and the soft mold disease Erwinia carotovora (Family: Enterobacteriaceae; Class: Gamma Proteobacteria) by the nutrient agar dilution method. A higher activity of chitosan and its derivatives was obtained with N-(o-ethylbenzyl)chitosan with a MIC of 500mg/L against E. carotovora, while N-(o,p-diethoxybenzyl)chitosan was the most active one against A. tumefaciens with a MIC of 1050mg/L. In addition, the in vitro antifungal assessment against root rot disease Fusarium oxysporum (Family: Tuberculariaceae; Class: Deuteromycetes) and the leaf spots and blights disease Pythium debaryanum (Family: Pythiaceae; Class: Oomycetes) was tested by a mycelial radial growth technique. The data showed that N-(o,p-diethoxybenzyl)chitosan was the most active one with an EC 50 of 400 and 468mg/L for F. oxysporum and P. debaryanum, respectively. In addition, chitosan derivatives had a detrimental effect on spore germination for F. oxysporum. Most of these derivatives exhibited high inhibition percentage (>90%) of spore germination at 1000mg/L.