We review the status of research concerning the links between hydrologic flowpaths and the biogeochemical environment controlling Nitrogen cycling and transport in near-stream saturated zones, centering on stream environments of the northern, temperate-forested zone. N retention, transformation and mobilization occur in streamside wetlands, floodplains, riparian zones, seepage faces, and the hyporheic zone. These areas are the focal point in non-point source loading of N to stream channels. They also represent areas where rapid changes in water-table and hydrologic flowpaths occur during rainfall-runoff events. It is the combination of an abrupt change in biogeochemical environment, encountering a hydrologic boundary (the terrestrial/aquatic interface or ecotone), that make the near-stream/saturated zone critical for elucidating controls of N transport and transformation. We review published studies concerning the hydrologic controls of N transport in near-stream zones, and subsequently present several geomorphic and hydrodynamic scenarios relating N biogeochemistry and its response to hydrologic events (of both varying magnitude and seasons). It is at the critical junction between temporal and spatial conditions affecting N cycling in the near-stream zone, that research priorities must now be focused.