The cytotoxicity of alkylmethylimidazolium-based ionic liquids on rat pheochromocytoma (PC12) cells was evaluated by 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) assay, lactate dehydrogenase release (LDH), and acridine orange staining in the present study. Mitochondrial depolarization, DNA fragmentation, reactive oxygen species (ROS) levels, and caspase-3 activity were also determined. The results showed dose-dependent cytotoxicity of ionic liquids on PC12 cells, and the ionic liquids with longer lateral chains had stronger cytotoxicity. Additionally, we found that exposure to the ionic liquid 1-octyl-3-methylimidazolium bromide ([C 8 mim]Br) provoked cellular LDH release, increased mitochondrial depolarization, induced cellular transmogrification, nuclear shrinkage and DNA fragmentation, and promoted caspase-3 activity and ROS levels in PC12 cells. These results suggest that [C 8 mim]Br may induce PC12 cell apoptosis triggered by excessive ROS and mediated by mitochondrial depolarization and permeability transition. Our result may be helpful for illuminating the cytotoxicity mechanism of alkylmethylimidazolium-based ionic liquids and safely using them in the future.