The concentrations of strontium and barium have been measured in water, sediment and the shells of mussels (Mytilus edulis) from a river system in the Sunart region of Scotland, UK. The aim was to establish the fate and mobility of these elements, which are slowly being released from old mine workings on the Strontian granites. Enhanced strontium (1500–2000μgl −1 and 250–290μgl −1 ) and barium concentrations (316μgl −1 and 83μgl −1 ) were found in the waters originating from the two mine drains studied. Both element were also found at significant levels in the river sediments taken from the vicinity of each drainage site (Sr: 225μgg −1 and 120–125μgg −1 ; Ba: 1380μgg −1 and 126–170μgg −1 ). The data suggests that the sediments are acting as a reservoir for these group II cations from where they become distributed throughout the river system. Strontium is found to be incorporated into the shells (3.16–3.46μgg −1 ) and pearls (3.57μgg −1 ) of the blue mussel, located at the estuarine margin some 10km downstream, at values close to the maximum expected (3.3% by weight of the calcium content). The study presents a view of the fate of barium and strontium in a river system over a prolonged period of time. As such it provides valuable information for studies that seek to model the impact of the accidental release of barium and strontium (including the important radionuclide 90 Sr) into the environment.